MolNFT v1 · #123643 · protein
Crystal structure of glucosyl-3-phosphoglycerate synthase from mycobacterium tuberculosis - apo form
5JQQ: “Crystal structure of glucosyl-3-phosphoglycerate synthase from mycobacterium tuberculosis - apo form”. X-ray diffraction, 1 pocket (best druggability 0.73). MolNFT v1 #123643 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5JQQ
- Type
- protein
- Length
- 276 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucosyl-3-phosphoglycerate synthase
- EC
- 2.4.1.266
- UniProt
- P9WMW9
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266) | protein | 276 | 41% helix, 18% strand | P9WMW9 |
Ligands and binding sites
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 465 | 0.73 | 0.82 | 52 | GOL |
Compared structures
- 5JQQ · Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis… · the same entry in another collection · chain A against A, TM-score 1.00
- P9WMW9 · AlphaFold monomer V2.0 prediction for glucosyl-3-phosphoglycerate synthase (P9WMW9) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WMW9
- Elsewhere: RCSB PDB 5JQQ · PDBe 5JQQ · UniProt P9WMW9
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