MolNFT v1 · #123597 · protein
Metal ABC transporter from listeria monocytogenes with cadmium
5JPD · Manganese-binding lipoprotein mnta: “Metal ABC transporter from listeria monocytogenes with cadmium”. X-ray diffraction, 2 ligands (CD, CL). MolNFT v1 #123597 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5JPD
- Type
- protein
- Length
- 280 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Manganese-binding lipoprotein mnta
- UniProt
- Q8Y653
- Ligands
- CD, CL
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Manganese-binding lipoprotein mnta | protein | 280 | 46% helix, 16% strand | Q8Y653 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 5JPD · Metal ABC transporter from Listeria monocytogenes with cadmium · the same entry in another collection · chain A against A, TM-score 1.00
- Q8Y653 · AlphaFold monomer V2.0 prediction for manganese-binding lipoprotein mnta (Q8Y653) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8Y653
- Elsewhere: RCSB PDB 5JPD · PDBe 5JPD · UniProt Q8Y653
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