MolNFT v1 · #123461 · protein
Crystal structure of the first transmembrane PAP2 type phosphatidylglycerolphosphate phosphatase from bacillus subtilis
5JKI · Putative lipid phosphate phosphatase yodm: “Crystal structure of the first transmembrane PAP2 type phosphatidylglycerolphosphate phosphatase from…”. X-ray diffraction, 2 ligands (UNL, WO4). MolNFT v1 #123461 on GenesisL1: 3D…
- PDB
- 5JKI
- Type
- protein
- Length
- 201 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative lipid phosphate phosphatase yodm
- EC
- 3.1.3.-
- UniProt
- O34349
- Ligands
- UNL, WO4
Structure
x-ray diffraction · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative lipid phosphate phosphatase yodm (EC 3.1.3.-) | protein | 201 | 77% helix, 0% strand | O34349 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · 4 copies · chains A
- WO4 · Tungstate(vi)ion · ion · chains A
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5JKI · Crystal structure of the first transmembrane PAP2 type phosphatidylglycerolphosphate… · the same entry in another collection · chain A against A, TM-score 1.00
- O34349 · AlphaFold monomer V2.0 prediction for phosphatidylglycerophosphatase B (O34349) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34349
- Elsewhere: RCSB PDB 5JKI · PDBe 5JKI · UniProt O34349
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