MolNFT v1 · #123411 · protein

Structure of the immature procapsid conformation of P22 portal protein

5JJ1: “Structure of the immature procapsid conformation of P22 portal protein”. X-ray diffraction, 20 pockets (best druggability 0.89). MolNFT v1 #123411 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5JJ1
Type: protein
Length: 7,020 residues
Chains: 12
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Portal protein
UniProt: P26744
Pockets: 20 · best druggability 0.89

Structure

x-ray diffraction · 1 distinct chain · 19% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J, K, L	Portal protein	protein	585	19% helix, 0% strand	P26744

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	812	0.89	0.93	120	empty
2	751	0.89	0.93	96	empty
3	671	0.88	0.93	112	empty
4	960	0.88	0.89	127	empty
5	575	0.87	0.93	89	empty

Interfaces

23 interfaces between chains.

G–H · 4933 Å² buried · 38 hydrogen bonds · protein-protein
F–G · 4931 Å² buried · 37 hydrogen bonds · protein-protein
A–B · 4659 Å² buried · 37 hydrogen bonds · protein-protein
E–F · 4654 Å² buried · 26 hydrogen bonds · protein-protein
H–I · 4626 Å² buried · 45 hydrogen bonds · protein-protein

Compared structures

5JJ1 · Structure of the Immature Procapsid Conformation of P22 Portal Protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P26744
Elsewhere: RCSB PDB 5JJ1 · PDBe 5JJ1 · UniProt P26744

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