MolNFT v1 · #123239 · protein

PIGG HOLO

5JDX · Putative peptidyl carrier protein: “PIGG HOLO”. Solution nmr, 1 ligand (PNS), 1 pocket (best druggability 0.34). MolNFT v1 #123239 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5JDX
Type: protein
Length: 89 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative peptidyl carrier protein
UniProt: Q5W265
Ligands: PNS
Pockets: 1 · best druggability 0.34

Structure

solution nmr · 1 distinct chain · 44% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative peptidyl carrier protein	protein	89	44% helix, 0% strand	Q5W265

Ligands and binding sites

PNS · 4'-phosphopantetheine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.34	0.78	12	empty

Modifications

Observed in the structure: 1 cofactor (phosphopantetheinylation).

Compared structures

5JDX · PigG holo · the same entry in another collection · chain A against A, TM-score 1.00
Q5W265 · AlphaFold monomer V2.0 prediction for probable acyl carrier protein pigg (Q5W265) · a predicted model of the same protein · chain A against A, TM-score 0.73

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5W265
Elsewhere: RCSB PDB 5JDX · PDBe 5JDX · UniProt Q5W265

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