MolNFT v1 · #123205 · protein
SPIR2-gtbm bound to myova-gtd
5JCY · Unconventional myosin-va: “SPIR2-gtbm bound to myova-gtd”. X-ray diffraction. MolNFT v1 #123205 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5JCY
- Type
- protein
- Length
- 388 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Unconventional myosin-va; Protein spire homolog 2
- UniProt
- Q9Y4I1, Q8WWL2
Structure
x-ray diffraction · 2 distinct chains · 60% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Unconventional myosin-va | protein | 371 | 62% helix, 3% strand | Q9Y4I1 |
| B | Protein spire homolog 2 | protein | 17 | 24% helix, 12% strand | Q8WWL2 |
Interfaces
1 interface between chains.
- A–B · 770 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5JCY · Spir2-GTBM bound to MyoVa-GTD · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y4I1 · AlphaFold monomer V2.0 prediction for unconventional myosin-va (Q9Y4I1) · a predicted model of the same protein · chain A against A, TM-score 0.96
- Q8WWL2 · AlphaFold monomer V2.0 prediction for protein spire homolog 2 (Q8WWL2) · a predicted model of the same protein · chain B against A, TM-score 0.41
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y4I1
- Every structure of UniProt Q8WWL2
- Elsewhere: RCSB PDB 5JCY · PDBe 5JCY · UniProt Q9Y4I1 · UniProt Q8WWL2
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