MolNFT v1 · #123186 · protein
Crystal structure of oscebip complex
5JCE · Chitin elicitor-binding protein: “Crystal structure of oscebip complex”. X-ray diffraction, 1 ligand (NAG), 6 pockets (best druggability 0.68). MolNFT v1 #123186 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5JCE
- Type
- protein
- Length
- 589 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chitin elicitor-binding protein
- UniProt
- Q8H8C7
- Ligands
- NAG
- Pockets
- 6 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 16% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chitin elicitor-binding protein | protein | 292 | 16% helix, 30% strand | Q8H8C7 |
| B | Chitin elicitor-binding protein | protein | 297 | 16% helix, 28% strand | Q8H8C7 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 7 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 746 | 0.68 | 0.76 | 78 | empty |
| 2 | 350 | 0.60 | 0.77 | 45 | empty |
| 3 | 180 | 0.52 | 0.78 | 25 | empty |
| 4 | 172 | 0.51 | 0.78 | 26 | empty |
| 5 | 110 | 0.44 | 0.78 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 297 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 7 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8H8C7
- Elsewhere: RCSB PDB 5JCE · PDBe 5JCE · UniProt Q8H8C7
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