MolNFT v1 · #123165 · protein

Trichoderma harzianum GH1 beta-glucosidase THBGL1

5JBK: “Trichoderma harzianum GH1 beta-glucosidase THBGL1”. X-ray diffraction, 8 pockets (best druggability 0.69). MolNFT v1 #123165 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5JBK
Type: protein
Length: 930 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-glucosidase
UniProt: A0A0F9ZQA8
Pockets: 8 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Beta-glucosidase	protein	465	43% helix, 16% strand	A0A0F9ZQA8

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	400	0.69	0.81	37	empty
2	404	0.68	0.80	45	GOL
3	382	0.67	0.80	34	GOL
4	604	0.66	0.76	50	empty
5	104	0.50	0.82	25	empty

Interfaces

1 interface between chains.

A–B · 1034 Å² buried · 17 hydrogen bonds · protein-protein

Compared structures

5JBK · Trichoderma harzianum GH1 beta-glucosidase ThBgl1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0F9ZQA8
Elsewhere: RCSB PDB 5JBK · PDBe 5JBK · UniProt A0A0F9ZQA8

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