MolNFT v1 · #12315 · RNA
The crystal structure of R(GGUCACAGCCC)2, barium form
1KD4 · 5'-R(*GP*GP*UP*CP*AP*CP*AP*GP*CP*CP*C)-3': “The crystal structure of R(GGUCACAGCCC)2, barium form”. X-ray diffraction, 1 ligand (BA). MolNFT v1 #12315 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1KD4
- Type
- RNA
- Length
- 22 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*GP*UP*CP*AP*CP*AP*GP*CP*CP*C)-3'
- Ligands
- BA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-R(*GP*GP*UP*CP*AP*CP*AP*GP*CP*CP*C)-3' | rna | 11 | — | — |
Ligands and binding sites
- BA · Barium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 575 Ų buried · 45 hydrogen bonds · nucleic-nucleic
Compared structures
- 1KD4 · The Crystal Structure of r(GGUCACAGCCC)2, Barium form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1KD4 · PDBe 1KD4
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