MolNFT v1 · #123076 · protein
Crystal structure of E. COLI PBP5 with 2C
5J8X · D-alanyl-D-alanine carboxypeptidase daca: “Crystal structure of E. COLI PBP5 with 2C”. X-ray diffraction, 1 ligand (OK3). MolNFT v1 #123076 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5J8X
- Type
- protein
- Length
- 340 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-alanyl-D-alanine carboxypeptidase daca
- EC
- 3.4.16.4, 3.5.2.6
- UniProt
- P0AEB2
- Ligands
- OK3
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-alanyl-D-alanine carboxypeptidase daca (EC 3.4.16.4, 3.5.2.6) | protein | 340 | 29% helix, 32% strand | P0AEB2 |
Ligands and binding sites
- OK3 · (4~{R})-4-[[4-(aminomethyl)phenyl]carbonylamino]-3,3-bis(oxidanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(10),6,8-triene-10-carboxylic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEB2
- Elsewhere: RCSB PDB 5J8X · PDBe 5J8X · UniProt P0AEB2
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