MolNFT v1 · #123005 · protein
CWP8 from clostridium difficile
5J6Q · Cell wall binding protein CWP8: “CWP8 from clostridium difficile”. X-ray diffraction, 2 ligands (SO4, CL), 5 pockets (best druggability 0.57). MolNFT v1 #123005 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5J6Q
- Type
- protein
- Length
- 595 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cell wall binding protein CWP8
- UniProt
- Q183N4
- Ligands
- SO4, CL
- Pockets
- 5 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cell wall binding protein CWP8 | protein | 595 | 34% helix, 26% strand | Q183N4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 287 | 0.57 | 0.77 | 23 | CL |
| 2 | 114 | 0.48 | 0.79 | 17 | empty |
| 3 | 97 | 0.42 | 0.77 | 18 | empty |
| 4 | 56 | 0.35 | 0.79 | 14 | empty |
| 5 | 55 | 0.32 | 0.77 | 16 | empty |
Compared structures
- 5J6Q · Cwp8 from Clostridium difficile · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q183N4
- Elsewhere: RCSB PDB 5J6Q · PDBe 5J6Q · UniProt Q183N4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.