MolNFT v1 · #122911 · protein
Crystal structure of S. pombe DCP1:EDC1 mRNA decapping complex
5J3Q · MRNA-decapping enzyme subunit 1: “Crystal structure of S. pombe DCP1:EDC1 mRNA decapping complex”. X-ray diffraction. MolNFT v1 #122911 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5J3Q
- Type
- protein
- Length
- 279 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MRNA-decapping enzyme subunit 1; EDC1
- UniProt
- Q9P805, Q10108
Structure
x-ray diffraction · 3 distinct chains · 26% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | MRNA-decapping enzyme subunit 1 | protein | 125 | 27% helix, 50% strand | Q9P805 |
| B | EDC1 | protein | 14 | 21% helix, 0% strand | Q10108 |
| D | EDC1 | protein | 15 | 20% helix, 0% strand | Q10108 |
Interfaces
4 interfaces between chains.
- A–B · 708 Ų buried · 8 hydrogen bonds · protein-protein
- C–D · 618 Ų buried · 7 hydrogen bonds · protein-protein
- B–C · 117 Ų buried · 0 hydrogen bonds · protein-protein
- A–C · 75 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 5J3Q · Crystal structure of S. pombe Dcp1:Edc1 mRNA decapping complex · the same entry in another collection · chain D against D, TM-score 1.00
- Q9P805 · AlphaFold monomer V2.0 prediction for mRNA-decapping enzyme subunit 1 (Q9P805) · a predicted model of the same protein · chain A against A, TM-score 0.97
- Q10108 · AlphaFold monomer V2.0 prediction for uncharacterized protein C18G6.09C (Q10108) · a predicted model of the same protein · chain B against A, TM-score 0.48
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9P805
- Every structure of UniProt Q10108
- Elsewhere: RCSB PDB 5J3Q · PDBe 5J3Q · UniProt Q9P805 · UniProt Q10108
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.