MolNFT v1 · #122898 · protein
Crystal structure of the extended tudor domain from TDRD2
5J39 · Tudor and kh domain-containing protein: “Crystal structure of the extended tudor domain from TDRD2”. X-ray diffraction, 1 ligand (UNX). MolNFT v1 #122898 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5J39
- Type
- protein
- Length
- 392 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tudor and kh domain-containing protein
- UniProt
- Q9Y2W6
- Ligands
- UNX
Structure
x-ray diffraction · 2 distinct chains · 21% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tudor and kh domain-containing protein | protein | 196 | 21% helix, 40% strand | Q9Y2W6 |
| B | Tudor and kh domain-containing protein | protein | 196 | 21% helix, 38% strand | Q9Y2W6 |
Ligands and binding sites
- UNX · Unknown atom or ion · ion · 18 copies · chains A, B
- CAC · Cacodylate ion · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5J39 · Crystal Structure of the extended TUDOR domain from TDRD2 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y2W6 · AlphaFold monomer V2.0 prediction for tudor and kh domain-containing protein (Q9Y2W6) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y2W6
- Elsewhere: RCSB PDB 5J39 · PDBe 5J39 · UniProt Q9Y2W6
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