MolNFT v1 · #122837 · protein
Structure of the spectrin repeats 5 and 6 of the plakin domain of plectin
5J1H · PLECTIN,PLECTIN: “Structure of the spectrin repeats 5 and 6 of the plakin domain of plectin”. X-ray diffraction, 4 pockets (best druggability 0.45). MolNFT v1 #122837 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5J1H
- Type
- protein
- Length
- 356 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PLECTIN,PLECTIN
- UniProt
- Q15149
- Pockets
- 4 · best druggability 0.45
Structure
x-ray diffraction · 2 distinct chains · 85% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PLECTIN,PLECTIN | protein | 183 | 85% helix, 0% strand | Q15149 |
| B | PLECTIN,PLECTIN | protein | 173 | 86% helix, 0% strand | Q15149 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 187 | 0.45 | 0.74 | 22 | empty |
| 2 | 52 | 0.41 | 0.81 | 13 | empty |
| 3 | 108 | 0.35 | 0.73 | 17 | empty |
| 4 | 70 | 0.32 | 0.74 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 370 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 5J1H · Structure of the spectrin repeats 5 and 6 of the plakin domain of plectin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q15149
- Elsewhere: RCSB PDB 5J1H · PDBe 5J1H · UniProt Q15149
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