MolNFT v1 · #122801 · DNA
Crystal structures of pribnow box consensus promoter sequence (P32)
5J0E: “Crystal structures of pribnow box consensus promoter sequence (P32)”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #122801 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5J0E
- Type
- DNA
- Length
- 66 nucleotides
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pribnow box consensus promoter sequence; Complementary sequence
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E | Pribnow box consensus promoter sequence | dna | 11 | — | — |
| B, D, F | Complementary sequence | dna | 11 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 9 copies · chains A, B, C, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
4 interfaces between chains.
- E–F · 452 Ų buried · 33 hydrogen bonds · nucleic-nucleic
- C–D · 438 Ų buried · 37 hydrogen bonds · nucleic-nucleic
- A–B · 435 Ų buried · 33 hydrogen bonds · nucleic-nucleic
- D–E · 21 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 5J0E · Crystal structures of Pribnow box consensus promoter sequence (P32) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5J0E · PDBe 5J0E
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