MolNFT v1 · #122782 · protein
De novo design of protein homo-oligomers with modular hydrogen bond network-mediated specificity
5IZS · Designed protein 5L6HC3_1: “De novo design of protein homo-oligomers with modular hydrogen bond network-mediated specificity”. X-ray diffraction, 9 pockets (best druggability 0.79). MolNFT v1 #122782 on GenesisL1: 3D structure…
- PDB
- 5IZS
- Type
- protein
- Length
- 479 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Designed protein 5L6HC3_1
- Pockets
- 9 · best druggability 0.79
Structure
x-ray diffraction · 5 distinct chains · 92% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Designed protein 5L6HC3_1 | protein | 77 | 94% helix, 0% strand | — |
| C | Designed protein 5L6HC3_1 | protein | 82 | 90% helix, 0% strand | — |
| D | Designed protein 5L6HC3_1 | protein | 82 | 93% helix, 0% strand | — |
| E | Designed protein 5L6HC3_1 | protein | 81 | 89% helix, 0% strand | — |
| F | Designed protein 5L6HC3_1 | protein | 80 | 93% helix, 0% strand | — |
Pockets
9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 115 | 0.79 | 0.97 | 21 | empty |
| 2 | 71 | 0.75 | 0.98 | 16 | empty |
| 3 | 352 | 0.66 | 0.80 | 46 | empty |
| 4 | 153 | 0.54 | 0.80 | 22 | empty |
| 5 | 148 | 0.51 | 0.80 | 22 | empty |
Interfaces
9 interfaces between chains.
- E–F · 1152 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 1140 Ų buried · 11 hydrogen bonds · protein-protein
- D–E · 1085 Ų buried · 11 hydrogen bonds · protein-protein
- D–F · 1070 Ų buried · 12 hydrogen bonds · protein-protein
- A–B · 1013 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 5IZS · De novo design of protein homo-oligomers with modular hydrogen bond network-mediated… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5IZS · PDBe 5IZS
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