MolNFT v1 · #122779 · DNA

Solution structure of DNA dodecamer with 8-oxoguanine at 10TH position

5IZP · DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(8OG)P*CP*G)-3'): “Solution structure of DNA dodecamer with 8-oxoguanine at 10TH position”. Solution nmr. MolNFT v1 #122779 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5IZP
Type: DNA
Length: 24 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(8OG)P*CP*G)-3')

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D(CPGPCPGPAPAPTPTPCP(8OG)PCPG)-3')	dna	12	—	—

Interfaces

1 interface between chains.

A–B · 573 Å² buried · 57 hydrogen bonds · nucleic-nucleic

Modifications

Observed in the structure: 2 modified (nucleotide modification).

Compared structures

5IZP · Solution Structure of DNA Dodecamer with 8-oxoguanine at 10th Position · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5IZP · PDBe 5IZP

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