MolNFT v1 · #122760 · protein

Crystal structure of a putative short-chain DEHYDROGENASE/REDUCTASE from burkholderia xenovorans

5IZ4: “Crystal structure of a putative short-chain DEHYDROGENASE/REDUCTASE from burkholderia xenovorans”. X-ray diffraction, 1 ligand (ADP), 1 pocket (best druggability 0.60). MolNFT v1 #122760 on GenesisL1: 3D structure, binding sites and…

PDB: 5IZ4
Type: protein
Length: 247 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative short-chain DEHYDROGENASE/REDUCTASE
EC: 1.1.1.100
UniProt: Q13GL4
Ligands: ADP
Pockets: 1 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative short-chain DEHYDROGENASE/REDUCTASE (EC 1.1.1.100)	protein	247	51% helix, 16% strand	Q13GL4

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · chains A
MRD · (4R)-2-methylpentane-2,4-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	363	0.60	0.77	42	ADP

Compared structures

5IZ4 · Crystal structure of a putative short-chain dehydrogenase/reductase from Burkholderia… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q13GL4
Elsewhere: RCSB PDB 5IZ4 · PDBe 5IZ4 · UniProt Q13GL4

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