MolNFT v1 · #122717 · protein
Crystal structure of extracellular solute-binding protein family 1
5IXP: “Crystal structure of extracellular solute-binding protein family 1”. X-ray diffraction, 1 pocket (best druggability 0.75). MolNFT v1 #122717 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5IXP
- Type
- protein
- Length
- 393 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Extracellular solute-binding protein family 1
- UniProt
- D2PV11
- Pockets
- 1 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Extracellular solute-binding protein family 1 | protein | 393 | 49% helix, 17% strand | D2PV11 |
Ligands and binding sites
- FMT · Formic acid · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 713 | 0.75 | 0.80 | 102 | FMT |
Modifications
Observed in the structure: 5 modified, 1 disulfide (engineered, disulfide).
Compared structures
- 5IXP · Crystal structure of Extracellular solute-binding protein family 1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D2PV11
- Elsewhere: RCSB PDB 5IXP · PDBe 5IXP · UniProt D2PV11
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