MolNFT v1 · #122693 · protein

Synaptonemal complex protein

5IWZ · Synaptonemal complex protein 2: “Synaptonemal complex protein”. X-ray diffraction, 2 pockets (best druggability 0.47). MolNFT v1 #122693 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5IWZ
Type: protein
Length: 372 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Synaptonemal complex protein 2
UniProt: Q9CUU3
Pockets: 2 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 57% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Synaptonemal complex protein 2	protein	372	57% helix, 19% strand	Q9CUU3

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	99	0.47	0.80	20	empty
2	101	0.43	0.78	19	empty

Compared structures

5IWZ · Synaptonemal complex protein · the same entry in another collection · chain A against A, TM-score 1.00
Q9CUU3 · AlphaFold monomer V2.0 prediction for synaptonemal complex protein 2 (Q9CUU3) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9CUU3
Elsewhere: RCSB PDB 5IWZ · PDBe 5IWZ · UniProt Q9CUU3

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