MolNFT v1 · #122668 · protein
Structure of bacteriophage T4 GP25, sheath polymerization initiator
5IW9 · Baseplate wedge protein GP25: “Structure of bacteriophage T4 GP25, sheath polymerization initiator”. X-ray diffraction, 3 pockets (best druggability 0.43). MolNFT v1 #122668 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5IW9
- Type
- protein
- Length
- 251 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Baseplate wedge protein GP25
- UniProt
- P09425
- Pockets
- 3 · best druggability 0.43
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Baseplate wedge protein GP25 | protein | 126 | 33% helix, 24% strand | P09425 |
| B | Baseplate wedge protein GP25 | protein | 125 | 36% helix, 28% strand | P09425 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.43 | 0.80 | 26 | empty |
| 2 | 98 | 0.41 | 0.77 | 27 | empty |
| 3 | 59 | 0.37 | 0.79 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 756 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 5IW9 · Structure of bacteriophage T4 gp25, sheath polymerization initiator · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09425
- Elsewhere: RCSB PDB 5IW9 · PDBe 5IW9 · UniProt P09425
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