MolNFT v1 · #122647 · protein
BC2 nanobody in complex with the BC2 peptide tag
5IVN · BC2-nanobody: “BC2 nanobody in complex with the BC2 peptide tag”. X-ray diffraction, 1 ligand (6E4). MolNFT v1 #122647 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5IVN
- Type
- protein
- Length
- 132 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- BC2-nanobody; Cadherin derived peptide
- UniProt
- G9GAG7
- Ligands
- 6E4
Structure
x-ray diffraction · 2 distinct chains · 5% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | BC2-nanobody | protein | 121 | 5% helix, 50% strand | — |
| B | Cadherin derived peptide | protein | 11 | 0% helix, 64% strand | G9GAG7 |
Ligands and binding sites
- 6E4 · L-glutamamide · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 865 Ų buried · 20 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide, 1 covalent, 1 modified (disulfide, covalent ligand, nonstandard).
Compared structures
- 5IVN · BC2 nanobody in complex with the BC2 peptide tag · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G9GAG7
- Elsewhere: RCSB PDB 5IVN · PDBe 5IVN · UniProt G9GAG7
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