MolNFT v1 · #122571 · protein
Galectin-related protein: an integral member of the network of chicken galectins
5IT6: “Galectin-related protein: an integral member of the network of chicken galectins”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.32). MolNFT v1 #122571 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5IT6
- Type
- protein
- Length
- 134 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Galectin-related protein
- UniProt
- Q5ZHQ2
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 1 distinct chain · 2% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Galectin-related protein | protein | 134 | 2% helix, 54% strand | Q5ZHQ2 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A
- PGE · Triethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 76 | 0.32 | 0.75 | 25 | PGE |
Compared structures
- 5IT6 · Galectin-related protein: an integral member of the network of chicken galectins · the same entry in another collection · chain A against A, TM-score 1.00
- Q5ZHQ2 · AlphaFold monomer V2.0 prediction for galectin-related protein (Q5ZHQ2) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5ZHQ2
- Elsewhere: RCSB PDB 5IT6 · PDBe 5IT6 · UniProt Q5ZHQ2
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