MolNFT v1 · #12257 · DNA
Solution structure of a 16 base-pair DNA related to the HIV-1 kappa B site
1KBD · DNA (5'-D(*CP*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*AP*GP*G)…: “Solution structure of a 16 base-pair DNA related to the HIV-1 kappa B site”. Solution nmr. MolNFT v1 #12257 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1KBD
- Type
- DNA
- Length
- 32 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*AP*GP*G)- 3'); DNA…
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*CP*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*AP*GP*G)- 3') | dna | 16 | — | — |
| B | DNA (5'-D(*CP*CP*TP*GP*GP*AP*AP*AP*GP*TP*CP*CP*CP*CP*AP*G)- 3') | dna | 16 | — | — |
Interfaces
1 interface between chains.
- A–B · 811 Ų buried · 60 hydrogen bonds · nucleic-nucleic
Compared structures
- 1KBD · Solution structure of a 16 base-pair DNA related to the HIV-1 kappa B site · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1KBD · PDBe 1KBD
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