MolNFT v1 · #122463 · protein
Structure of ORF49 from kshv
5IPX · ORF49 protein: “Structure of ORF49 from kshv”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.34). MolNFT v1 #122463 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5IPX
- Type
- protein
- Length
- 282 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ORF49 protein
- UniProt
- E5LBX2
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 73% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ORF49 protein | protein | 282 | 73% helix, 2% strand | E5LBX2 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.34 | 0.77 | 13 | empty |
Compared structures
- 5IPX · Structure of ORF49 from KSHV · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E5LBX2
- Elsewhere: RCSB PDB 5IPX · PDBe 5IPX · UniProt E5LBX2
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