MolNFT v1 · #122462 · protein
Oligopeptide-binding protein oppa
5IPW · Oligopeptide ABC transporter, periplasmic oligopeptide…: “Oligopeptide-binding protein oppa”. X-ray diffraction, 6 pockets (best druggability 0.73). MolNFT v1 #122462 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5IPW
- Type
- protein
- Length
- 633 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oligopeptide ABC transporter, periplasmic oligopeptide- binding protein, putative
- UniProt
- Q9WXR2
- Pockets
- 6 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oligopeptide ABC transporter, periplasmic oligopeptide- binding protein, putative | protein | 633 | 36% helix, 19% strand | Q9WXR2 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 621 | 0.73 | 0.80 | 56 | empty |
| 2 | 64 | 0.51 | 0.85 | 18 | empty |
| 3 | 82 | 0.44 | 0.80 | 23 | empty |
| 4 | 50 | 0.40 | 0.81 | 17 | empty |
| 5 | 159 | 0.40 | 0.73 | 24 | empty |
Compared structures
- 5IPW · oligopeptide-binding protein OppA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WXR2
- Elsewhere: RCSB PDB 5IPW · PDBe 5IPW · UniProt Q9WXR2
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