MolNFT v1 · #122406 · protein
Bovine beta-lactoglobulin complex with dodecane at high pressure (0.43 gpa)
5IO7: “Bovine beta-lactoglobulin complex with dodecane at high pressure (0.43 gpa)”. X-ray diffraction, 2 ligands (D12, CL), 1 pocket (best druggability 0.65). MolNFT v1 #122406 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5IO7
- Type
- protein
- Length
- 162 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-lactoglobulin
- UniProt
- P02754
- Ligands
- D12, CL
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-lactoglobulin | protein | 162 | 17% helix, 36% strand | P02754 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 200 | 0.65 | 0.83 | 36 | D12 |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5IO7 · Bovine beta-lactoglobulin complex with dodecane at high pressure (0.43 GPa) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02754
- Elsewhere: RCSB PDB 5IO7 · PDBe 5IO7 · UniProt P02754
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