MolNFT v1 · #12240 · protein

Structure of single stranded DNA binding protein (ssb)

1KAW · Single-stranded DNA binding protein: “Structure of single stranded DNA binding protein (ssb)”. X-ray diffraction, 8 pockets (best druggability 0.42). MolNFT v1 #12240 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1KAW
Type: protein
Length: 384 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Single-stranded DNA binding protein
UniProt: P02339
Pockets: 8 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 10% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Single-stranded DNA binding protein	protein	96	10% helix, 50% strand	P02339

Pockets

8 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.42	0.78	18	empty
2	89	0.41	0.78	20	empty
3	112	0.38	0.75	15	empty
4	61	0.36	0.79	16	empty
5	93	0.36	0.75	16	empty

Interfaces

5 interfaces between chains.

A–B · 1241 Å² buried · 32 hydrogen bonds · protein-protein
C–D · 1238 Å² buried · 32 hydrogen bonds · protein-protein
A–C · 622 Å² buried · 13 hydrogen bonds · protein-protein
A–D · 64 Å² buried · 0 hydrogen bonds · protein-protein
B–C · 43 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

1KAW · Structure of single stranded DNA binding protein (ssb) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02339
Elsewhere: RCSB PDB 1KAW · PDBe 1KAW · UniProt P02339

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