MolNFT v1 · #122360 · protein
Nanobody targeting mouse VSIG4 in spacegroup P3221
5IMO: “Nanobody targeting mouse VSIG4 in spacegroup P3221”. X-ray diffraction. MolNFT v1 #122360 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5IMO
- Type
- protein
- Length
- 244 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nanobody; Protein VSIG4
- UniProt
- F6TUL9
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Nanobody | protein | 125 | 7% helix, 46% strand | — |
| A | Protein VSIG4 | protein | 119 | 5% helix, 55% strand | F6TUL9 |
Interfaces
1 interface between chains.
- B–A · 858 Ų buried · 24 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5IMO · Nanobody targeting mouse Vsig4 in Spacegroup P3221 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F6TUL9
- Elsewhere: RCSB PDB 5IMO · PDBe 5IMO · UniProt F6TUL9
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