MolNFT v1 · #122357 · protein
Nanobody targeting human VSIG4 in spacegroup P212121
5IML · V-set and immunoglobulin domain-containing protein 4: “Nanobody targeting human VSIG4 in spacegroup P212121”. X-ray diffraction. MolNFT v1 #122357 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5IML
- Type
- protein
- Length
- 244 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- V-set and immunoglobulin domain-containing protein 4; Nanobody
- UniProt
- Q9Y279
Structure
x-ray diffraction · 2 distinct chains · 7% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | V-set and immunoglobulin domain-containing protein 4 | protein | 119 | 5% helix, 53% strand | Q9Y279 |
| B | Nanobody | protein | 125 | 10% helix, 47% strand | — |
Interfaces
1 interface between chains.
- A–B · 762 Ų buried · 11 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5IML · Nanobody targeting human Vsig4 in Spacegroup P212121 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y279 · AlphaFold monomer V2.0 prediction for V-set and immunoglobulin domain-containing protein… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y279
- Elsewhere: RCSB PDB 5IML · PDBe 5IML · UniProt Q9Y279
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