MolNFT v1 · #122355 · protein
Crystal structure of a Z-ring associated protein from escherichia COLI
5IMJ · Cell division protein zapd: “Crystal structure of a Z-ring associated protein from escherichia COLI”. X-ray diffraction, 1 ligand (SO4), 11 pockets (best druggability 0.74). MolNFT v1 #122355 on GenesisL1: 3D structure, binding…
- PDB
- 5IMJ
- Type
- protein
- Length
- 492 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cell division protein zapd
- UniProt
- P36680
- Ligands
- SO4
- Pockets
- 11 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cell division protein zapd | protein | 246 | 48% helix, 18% strand | P36680 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.74 | 0.96 | 24 | empty |
| 2 | 202 | 0.52 | 0.77 | 31 | empty |
| 3 | 191 | 0.49 | 0.76 | 22 | empty |
| 4 | 99 | 0.46 | 0.79 | 22 | empty |
| 5 | 106 | 0.45 | 0.79 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1800 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 5IMJ · Crystal structure of a Z-ring associated protein from Escherichia coli · the same entry in another collection · chain A against A, TM-score 1.00
- P36680 · AlphaFold monomer V2.0 prediction for cell division protein zapd (P36680) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P36680
- Elsewhere: RCSB PDB 5IMJ · PDBe 5IMJ · UniProt P36680
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