MolNFT v1 · #122351 · protein

Xanthomonas campestris peroxiredoxin Q - structure F5

5IMF · Bacterioferritin comigratory protein: “Xanthomonas campestris peroxiredoxin Q - structure F5”. X-ray diffraction, 2 ligands (ACE, NA). MolNFT v1 #122351 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5IMF
Type: protein
Length: 158 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bacterioferritin comigratory protein
UniProt: Q8P9V9
Ligands: ACE, NA

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Bacterioferritin comigratory protein	protein	158	35% helix, 27% strand	Q8P9V9

Ligands and binding sites

ACE · Acetyl group · ligand · chains A
NA · Sodium ion · metal · 3 copies · chains A
FMT · Formic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 covalent, 1 modified (covalent ligand, oxidation).

Compared structures

5IMF · Xanthomonas campestris Peroxiredoxin Q - Structure F5 · the same entry in another collection · chain A against A, TM-score 1.00
Q8P9V9 · AlphaFold monomer V2.0 prediction for peroxiredoxin bcp (Q8P9V9) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8P9V9
Elsewhere: RCSB PDB 5IMF · PDBe 5IMF · UniProt Q8P9V9

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