MolNFT v1 · #122337 · protein

Tobacco 5-epi-aristolochene synthase without buffer molecule in the active site

5IM1: “Tobacco 5-epi-aristolochene synthase without buffer molecule in the active site”. X-ray diffraction, 7 pockets (best druggability 0.81). MolNFT v1 #122337 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5IM1
Type: protein
Length: 536 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5-epi-aristolochene synthase
EC: 4.2.3.61
UniProt: Q40577
Pockets: 7 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 71% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	5-epi-aristolochene synthase (EC 4.2.3.61)	protein	536	71% helix, 0% strand	Q40577

Pockets

7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	554	0.81	0.87	51	empty
2	621	0.81	0.86	58	empty
3	338	0.58	0.76	30	empty
4	228	0.57	0.79	28	empty
5	97	0.50	0.82	15	empty

Compared structures

5IM1 · Tobacco 5-epi-aristolochene synthase without buffer molecule in the active site · the same entry in another collection · chain A against A, TM-score 1.00
Q40577 · AlphaFold monomer V2.0 prediction for 5-epi-aristolochene synthase (Q40577) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q40577
Elsewhere: RCSB PDB 5IM1 · PDBe 5IM1 · UniProt Q40577

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