MolNFT v1 · #122301 · protein
Glycerol bound structure of OBC1, a bifunctional enzyme for quorum sensing-dependent oxalogenesis
5IKZ · Oxalate biosynthetic component 1: “Glycerol bound structure of OBC1, a bifunctional enzyme for quorum sensing-dependent oxalogenesis”. X-ray diffraction, 1 ligand (MG), 8 pockets (best druggability 0.83). MolNFT v1 #122301 on…
- PDB
- 5IKZ
- Type
- protein
- Length
- 1,047 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oxalate biosynthetic component 1
- UniProt
- A0A096YSN3
- Ligands
- MG
- Pockets
- 8 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oxalate biosynthetic component 1 | protein | 1047 | 41% helix, 16% strand | A0A096YSN3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1073 | 0.83 | 0.84 | 108 | GOL |
| 2 | 472 | 0.77 | 0.85 | 58 | empty |
| 3 | 681 | 0.69 | 0.77 | 86 | MG |
| 4 | 284 | 0.54 | 0.76 | 44 | empty |
| 5 | 57 | 0.53 | 0.88 | 19 | empty |
Compared structures
- 5IKZ · Glycerol bound structure of Obc1, a bifunctional enzyme for quorum sensing-dependent… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A096YSN3
- Elsewhere: RCSB PDB 5IKZ · PDBe 5IKZ · UniProt A0A096YSN3
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