MolNFT v1 · #122300 · protein

Apo structure of OBC1, a bifunctional enzyme for quorum sensing- dependent oxalogenesis

5IKY · Oxalate biosynthetic component 1: “Apo structure of OBC1, a bifunctional enzyme for quorum sensing- dependent oxalogenesis”. X-ray diffraction, 1 ligand (MG), 11 pockets (best druggability 0.81). MolNFT v1 #122300 on GenesisL1: 3D…

PDB: 5IKY
Type: protein
Length: 1,048 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Oxalate biosynthetic component 1
UniProt: A0A096YSN3
Ligands: MG
Pockets: 11 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Oxalate biosynthetic component 1	protein	1048	42% helix, 17% strand	A0A096YSN3

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

11 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1055	0.81	0.82	114	empty
2	539	0.77	0.84	63	empty
3	82	0.74	0.96	17	empty
4	50	0.72	0.99	18	empty
5	510	0.66	0.77	68	MG

Compared structures

5IKY · Apo structure of Obc1, a bifunctional enzyme for quorum sensing-dependent oxalogenesis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A096YSN3
Elsewhere: RCSB PDB 5IKY · PDBe 5IKY · UniProt A0A096YSN3

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