MolNFT v1 · #122294 · protein
Wild-type sperm whale myoglobin with a fe-phenyl moiety
5IKS: “Wild-type sperm whale myoglobin with a fe-phenyl moiety”. X-ray diffraction, 2 ligands (6CO, SO4), 1 pocket (best druggability 0.71). MolNFT v1 #122294 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5IKS
- Type
- protein
- Length
- 151 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Myoglobin
- UniProt
- P02185
- Ligands
- 6CO, SO4
- Pockets
- 1 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Myoglobin | protein | 151 | 79% helix, 0% strand | P02185 |
Ligands and binding sites
- 6CO · [3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)di(propanoato)(2-)](phenyl)iron · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 242 | 0.71 | 0.85 | 28 | 6CO |
Compared structures
- 5IKS · Wild-type sperm whale myoglobin with a Fe-phenyl moiety · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02185
- Elsewhere: RCSB PDB 5IKS · PDBe 5IKS · UniProt P02185
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