MolNFT v1 · #122241 · protein
[nife] hydrogenase maturation protease hybd from thermococcus kodakarensis
5IJA · Hydrogenase-specific maturation endopeptidase: “[nife] hydrogenase maturation protease hybd from thermococcus kodakarensis”. X-ray diffraction, 1 pocket (best druggability 0.33). MolNFT v1 #122241 on GenesisL1: 3D structure, binding…
- PDB
- 5IJA
- Type
- protein
- Length
- 296 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hydrogenase-specific maturation endopeptidase
- UniProt
- Q8NKS1
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hydrogenase-specific maturation endopeptidase | protein | 148 | 42% helix, 24% strand | Q8NKS1 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 78 | 0.33 | 0.74 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 171 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 5IJA · [NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NKS1
- Elsewhere: RCSB PDB 5IJA · PDBe 5IJA · UniProt Q8NKS1
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