MolNFT v1 · #12212 · protein
The papase HAL2P complexed with a sodium ion and the reaction product AMP
1KA0 · Halotolerance protein HAL2: “The papase HAL2P complexed with a sodium ion and the reaction product AMP”. X-ray diffraction, 2 ligands (AMP, NA), 1 pocket (best druggability 0.70). MolNFT v1 #12212 on GenesisL1: 3D structure, binding…
- PDB
- 1KA0
- Type
- protein
- Length
- 353 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Halotolerance protein HAL2
- EC
- 3.1.3.7
- UniProt
- P32179
- Ligands
- AMP, NA
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Halotolerance protein HAL2 (EC 3.1.3.7) | protein | 353 | 39% helix, 20% strand | P32179 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 295 | 0.70 | 0.84 | 38 | AMP |
Compared structures
- 1KA0 · The PAPase Hal2p complexed with a sodium ion and the reaction product AMP · the same entry in another collection · chain A against A, TM-score 1.00
- P32179 · AlphaFold monomer V2.0 prediction for 3'(2'),5'-bisphosphate nucleotidase (P32179) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32179
- Elsewhere: RCSB PDB 1KA0 · PDBe 1KA0 · UniProt P32179
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