MolNFT v1 · #122053 · protein
Structure of the nucleotide binding domain of an ABC transporter msba from acinetobacter baumannii
5IDV · Lipid a export ATP-BINDING/PERMEASE protein msba: “Structure of the nucleotide binding domain of an ABC transporter msba from acinetobacter baumannii”. X-ray diffraction, 2 pockets (best druggability 0.53). MolNFT v1 #122053 on…
- PDB
- 5IDV
- Type
- protein
- Length
- 263 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipid a export ATP-BINDING/PERMEASE protein msba
- EC
- 3.6.3.-
- UniProt
- A0A0Q2LVW2
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipid a export ATP-BINDING/PERMEASE protein msba (EC 3.6.3.-) | protein | 263 | 36% helix, 24% strand | A0A0Q2LVW2 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 246 | 0.53 | 0.76 | 30 | empty |
| 2 | 63 | 0.48 | 0.84 | 16 | EDO |
Compared structures
- 5IDV · Structure of the nucleotide binding domain of an ABC transporter MsbA from Acinetobacter… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0Q2LVW2
- Elsewhere: RCSB PDB 5IDV · PDBe 5IDV · UniProt A0A0Q2LVW2
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