MolNFT v1 · #122043 · protein
Crystal structure of the germline-targeting HIV-1 GP120 engineered outer domain, eod-GT8
5IDL: “Crystal structure of the germline-targeting HIV-1 GP120 engineered outer domain, eod-GT8”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #122043 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5IDL
- Type
- protein
- Length
- 162 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Germline-targeting HIV-1 GP120 engineered outer domain, eod-GT8
- Ligands
- NAG
Structure
x-ray diffraction · 1 distinct chain · 19% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Germline-targeting HIV-1 GP120 engineered outer domain, eod-GT8 | protein | 162 | 19% helix, 40% strand | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 4 disulfide, 2 glycan (disulfide, N-glycosylation).
Compared structures
- 5IDL · Crystal structure of the germline-targeting HIV-1 gp120 engineered outer domain, eOD-GT8 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5IDL · PDBe 5IDL
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