MolNFT v1 · #122041 · protein
Bifunctional histidine kinase ccka (domains dhp-ca) in complex with ADP/MG2+
5IDJ: “Bifunctional histidine kinase ccka (domains dhp-ca) in complex with ADP/MG2+”. X-ray diffraction, 2 ligands (ADP, MG), 2 pockets (best druggability 0.64). MolNFT v1 #122041 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5IDJ
- Type
- protein
- Length
- 242 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Histidine kinase
- EC
- 2.7.13.3
- UniProt
- Q9X688
- Ligands
- ADP, MG
- Pockets
- 2 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Histidine kinase (EC 2.7.13.3) | protein | 242 | 49% helix, 18% strand | Q9X688 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 357 | 0.64 | 0.79 | 41 | ADP, MG |
| 2 | 98 | 0.39 | 0.76 | 24 | empty |
Compared structures
- 5IDJ · Bifunctional histidine kinase CckA (domains DHp-CA) in complex with ADP/Mg2+ · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X688
- Elsewhere: RCSB PDB 5IDJ · PDBe 5IDJ · UniProt Q9X688
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