MolNFT v1 · #122039 · protein
Crystal structure of enterococcus faecalis lipoate-protein ligase a (lpla-2) in complex with 8-bromooctanoic acid
5IDH · Lipoate--protein ligase: “Crystal structure of enterococcus faecalis lipoate-protein ligase a (lpla-2) in complex with 8-bromooctanoic…”. X-ray diffraction, 1 ligand (SH6), 3 pockets (best druggability 0.62). MolNFT v1 #122039 on…
- PDB
- 5IDH
- Type
- protein
- Length
- 316 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipoate--protein ligase
- EC
- 2.7.7.63
- UniProt
- Q830N7
- Ligands
- SH6
- Pockets
- 3 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipoate--protein ligase (EC 2.7.7.63) | protein | 316 | 35% helix, 28% strand | Q830N7 |
Ligands and binding sites
- SH6 · 8-bromooctanoic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 228 | 0.62 | 0.81 | 43 | SH6 |
| 2 | 111 | 0.51 | 0.81 | 25 | empty |
| 3 | 91 | 0.41 | 0.78 | 21 | empty |
Compared structures
- 5IDH · Crystal structure of Enterococcus faecalis lipoate-protein ligase A (lplA-2) in complex… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q830N7
- Elsewhere: RCSB PDB 5IDH · PDBe 5IDH · UniProt Q830N7
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