MolNFT v1 · #121987 · protein
Crystal structure of human astrovirus capsid protein
5IBV · Capsid polyprotein VP90: “Crystal structure of human astrovirus capsid protein”. X-ray diffraction, 4 pockets (best druggability 0.65). MolNFT v1 #121987 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5IBV
- Type
- protein
- Length
- 324 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid polyprotein VP90
- UniProt
- Q9IFX1
- Pockets
- 4 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid polyprotein VP90 | protein | 324 | 14% helix, 42% strand | Q9IFX1 |
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 217 | 0.65 | 0.83 | 30 | empty |
| 2 | 50 | 0.61 | 0.93 | 18 | empty |
| 3 | 78 | 0.57 | 0.88 | 23 | empty |
| 4 | 111 | 0.50 | 0.82 | 19 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 5IBV · Crystal Structure of Human Astrovirus capsid protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9IFX1
- Elsewhere: RCSB PDB 5IBV · PDBe 5IBV · UniProt Q9IFX1
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