MolNFT v1 · #121912 · protein + RNA
Crystal structure of designed pentatricopeptide repeat protein dppr- U8A2 in complex with its target RNA U8A2
5I9D · Pentatricopeptide repeat protein dppr-U8A2: “Crystal structure of designed pentatricopeptide repeat protein dppr- U8A2 in complex with its target RNA U8A2”. X-ray diffraction. MolNFT v1 #121912 on GenesisL1: 3D structure, binding…
- PDB
- 5I9D
- Type
- protein + RNA
- Length
- 371 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pentatricopeptide repeat protein dppr-U8A2; RNA (5'…
Structure
x-ray diffraction · 2 distinct chains · 71% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pentatricopeptide repeat protein dppr-U8A2 | protein | 360 | 71% helix, 0% strand | — |
| B | RNA (5'- R(*GP*GP*GP*G*UP*UP*UP*UP*AP*AP*UP*UP*UP*UP*CP*CP*CP*C)-3') | rna | 11 | — | — |
Interfaces
1 interface between chains.
- A–B · 1548 Ų buried · 34 hydrogen bonds · protein-nucleic
Compared structures
- 5I9D · Crystal structure of designed pentatricopeptide repeat protein dPPR-U8A2 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5I9D · PDBe 5I9D
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