MolNFT v1 · #121807 · protein
BICYCLO[3.3.2]DECAPEPTIDE
5I6A · Ala-phe-gly-lyd-val-phe-pro-gln-ala-gly: “BICYCLO[3.3.2]DECAPEPTIDE”. X-ray diffraction. MolNFT v1 #121807 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5I6A
- Type
- protein
- Length
- 20 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ala-phe-gly-lyd-val-phe-pro-gln-ala-gly
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ala-phe-gly-lyd-val-phe-pro-gln-ala-gly | protein | 10 | 0% helix, 0% strand | — |
Ligands and binding sites
- DMS · Dimethyl sulfoxide · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 140 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 d-amino, 2 isopeptide (D-amino acid, isopeptide).
Compared structures
- 5I6A · bicyclo[3.3.2]decapeptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5I6A · PDBe 5I6A
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