MolNFT v1 · #12164 · DNA
NMR structure of the XBY2 DNA duplex, an analog of CK14 containing phosphorodithioate groups at C22 and C24
1K8N · First strand of CK14 DNA duplex: “NMR structure of the XBY2 DNA duplex, an analog of CK14 containing phosphorodithioate groups at C22 and C24”. Solution nmr. MolNFT v1 #12164 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1K8N
- Type
- DNA
- Length
- 28 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- First strand of CK14 DNA duplex; Second strand of CK14 DNA duplex
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | First strand of CK14 DNA duplex | dna | 14 | — | — |
| B | Second strand of CK14 DNA duplex | dna | 14 | — | — |
Interfaces
1 interface between chains.
- A–B · 655 Ų buried · 65 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 2 modified (nucleotide modification).
Compared structures
- 1K8N · NMR structure of the XBY2 DNA duplex, an analog of CK14 containing phosphorodithioate… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1K8N · PDBe 1K8N
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