MolNFT v1 · #12162 · DNA
XBY6: an analog of CK14 containing 6 dithiophosphate groups
1K8L · First strand of CK14 DNA duplex: “XBY6: an analog of CK14 containing 6 dithiophosphate groups”. Solution nmr. MolNFT v1 #12162 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1K8L
- Type
- DNA
- Length
- 28 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- First strand of CK14 DNA duplex; Second strand of CK14 DNA duplex
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | First strand of CK14 DNA duplex | dna | 14 | — | — |
| B | Second strand of CK14 DNA duplex | dna | 14 | — | — |
Interfaces
1 interface between chains.
- A–B · 635 Ų buried · 67 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 6 modified (nucleotide modification).
Compared structures
- 1K8L · XBY6: An analog of CK14 containing 6 dithiophosphate groups · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1K8L · PDBe 1K8L
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