MolNFT v1 · #121607 · protein
Cycloalternan-degrading enzyme from trueperella pyogenes in complex with cycloalternan
5I0G · Glycoside hydrolase family 31: “Cycloalternan-degrading enzyme from trueperella pyogenes in complex with cycloalternan”. X-ray diffraction, 1 ligand (GLC), 4 pockets (best druggability 0.75). MolNFT v1 #121607 on GenesisL1: 3D…
- PDB
- 5I0G
- Type
- protein
- Length
- 730 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycoside hydrolase family 31
- UniProt
- X4QP62
- Ligands
- GLC
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Glycoside hydrolase family 31 | protein | 730 | 26% helix, 27% strand | X4QP62 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 770 | 0.75 | 0.80 | 74 | empty |
| 2 | 270 | 0.61 | 0.79 | 32 | GLC |
| 3 | 66 | 0.34 | 0.77 | 17 | empty |
| 4 | 59 | 0.30 | 0.75 | 19 | empty |
Compared structures
- 5I0G · Cycloalternan-degrading enzyme from Trueperella pyogenes in complex with cycloalternan · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt X4QP62
- Elsewhere: RCSB PDB 5I0G · PDBe 5I0G · UniProt X4QP62
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