MolNFT v1 · #121555 · protein
Plant peptide hormone receptor RGFR1 in complex with RGF2
5HZ0 · Probable lrr receptor-like SERINE/THREONINE-protein kinase…: “Plant peptide hormone receptor RGFR1 in complex with RGF2”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #121555 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5HZ0
- Type
- protein
- Length
- 637 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable lrr receptor-like SERINE/THREONINE-protein kinase AT4G26540…
- EC
- 2.7.11.1
- UniProt
- C0LGR3
- Ligands
- NAG
Structure
x-ray diffraction · 2 distinct chains · 19% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Probable lrr receptor-like SERINE/THREONINE-protein kinase AT4G26540 (EC 2.7.11.1) | protein | 624 | 19% helix, 21% strand | C0LGR3 |
| A | Asp-ptr-TRP-lys-pro-arg-his-his-pro-hyp-arg-asn-asn | protein | 13 | 0% helix, 0% strand | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- B–A · 1044 Ų buried · 27 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 glycan, 2 modified (N-glycosylation, nonstandard, phosphorylation).
Compared structures
- 5HZ0 · Plant peptide hormone receptor RGFR1 in complex with RGF2 · the same entry in another collection · chain B against B, TM-score 1.00
- C0LGR3 · AlphaFold monomer V2.0 prediction for lrr receptor-like SERINE/THREONINE-protein kinase… · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C0LGR3
- Elsewhere: RCSB PDB 5HZ0 · PDBe 5HZ0 · UniProt C0LGR3
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