MolNFT v1 · #121554 · protein

Crystal structure of SCL7 in oryza sativa

5HYZ · Gras family transcription factor containing protein…: “Crystal structure of SCL7 in oryza sativa”. X-ray diffraction, 2 pockets (best druggability 0.67). MolNFT v1 #121554 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 5HYZ
Type: protein
Length: 362 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Gras family transcription factor containing protein, expressed
UniProt: Q53K16
Pockets: 2 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Gras family transcription factor containing protein, expressed	protein	362	52% helix, 17% strand	Q53K16

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	282	0.67	0.83	52	empty
2	132	0.44	0.76	23	empty

Modifications

Observed in the structure: 5 modified (engineered).

Compared structures

5HYZ · Crystal Structure of SCL7 in Oryza sativa · the same entry in another collection · chain A against A, TM-score 1.00
Q53K16 · AlphaFold monomer V2.0 prediction for scarecrow-like protein 7 (Q53K16) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q53K16
Elsewhere: RCSB PDB 5HYZ · PDBe 5HYZ · UniProt Q53K16

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